Selected Publications

  1. Rui Jiang, Zhidong Tu, Ting Chen, and Fengzhu Sun. Network Identification in Stochastic Networks. Proc. Natl. Acad. Sci. USA, Vol.103, No.25, 9404~9409, 2006.
    [pdf][pdf @ PNAS]
  2. Rui Jiang, Hua Yang, Linqi Zhou, C.-C. Jay Kuo, Fengzhu Sun, and Ting Chen. Sequence-based prioritization of single nucleotide polymorphisms for study of human mutations, American Journal of Human Genetics, Vol.81, No.2, 346-360, 2007.
    [pdf][pdf @ AJHG]
  3. Xuebing Wu, Rui Jiang, Michael Q. Zhang, Shao Li. Network-based global inference of human disease genes, MolecularSystems Biology, Vol.4, 189, 2008.
    [pdf][pdf @ MSB]
  4. Wanwan Tang, Xuebing Wu, Rui Jiang*, Yanda Li*, Epistatic module detection for case-control studies: A Bayesian module with a Gibbs sampling strategy, PLoS Genetics, 5(5): e1000464, 2009.
    [pdf][pdf @ PLoS Genetics]
  5. Xuebing Wu, Qifang Liu, Rui Jiang*. Align human interactome with phenome to identify causative genes and networks underlying disease families, Bioinformatics, vol.25, no.1, 98-104, 2009.
    [pdf][pdf @ Bioinformatics]
  6. Rui Jiang, Wanwan Tang, Xuebing Wu, Wenhui Fu. A random forest approach to the detection of epistatic interactions incase-control studies, BMC Bioinformatics, 10(Suppl 1):S65, 2009.
    [pdf][pdf @ BMC bioinformatics]
  7. Wangshu Zhang, Yong Chen, Fengzhu Sun, Rui Jiang*, DomainRBF: a Bayesian regression approach to the prioritization ofcandidate domains for complex diseases, BMC Systems Biology, 5:55, 2011
  8. Wangshu Zhang, Fengzhu Sun, Rui Jiang*, Integrating multiple protein-protein interaction networks to prioritize disease genes: A Bayesian regression approach, BMC Bioinformatics 12(Supp 1), S11, 2011
  9. Yong Chen, Tao Jiang, Rui Jiang*, Uncover disease genes by maximizing information flow in the phenome-interactome network, Bioinformatics, 27:i167-i176, 2011
  10. Feng Zeng, Rui Jiang*, Ting Chen*, PyroHMMsnp: a SNP caller for Ion Torrent and 454 sequencing data, Nucleic Acids Research, accepted, 2013

Journal Publications

  1. Feng Zeng, Rui Jiang*, Ting Chen*, PyroHMMsnp: a SNP caller for Ion Torrent and 454 sequencing data, Nucleic Acids Research, accepted, 2013
  2. Mingxin Gan, Rui Jiang*, Improving accuracy and diversity of personalized recommendation through power law adjustments of user similarities, Decision Support Systems, In press, 2013
  3. Mingxin Gan, Rui Jiang*, Constructing a user similarity network to remove adverse influence of popular objects for personalized recommendation, Expert Systems with Applications, 40:4044-4053, 2013
  4. Xin-Ming Zhao, Weidong Tian, Rui Jiang, Jun Wan, Computational Systems Biology, The Scientific World Journal, 2013:350358, 2013
  5. Mingxin Gan, Xue Dou, Rui Jiang*, From ontology to semantic similarity: calculation of ontology-based semantic similarity, The Scientific World Journal, 2013:793091, 2013
  6. Jiaxin Wu, Rui Jiang*, Prediction of deleterious nonsynonymous single-nucleotide polymorphism for human diseases, The Scientific World Journal, 2013:675851, 2013
  7. Bai Jiang, Xujun, Liang, Yang Chen, Tao Ma, Liyang Liu, Junfeng Li, Rui Jiang, Ting Chen, Xuegong Zhang*, Shao Li*, Integrating next-generation sequencing and traditional tongue diagnosis to determine tongue coating microbiome, Scientific Reports, 2:936, 2012
  8. Yong Chen, Wangshu Zhang, Mingxin Gan, Rui Jiang*, Constructing phenome-interactome networks for the prioritization of candidate genes, Statistics and Its Interface, 5:137-148, 2012
  9. Yong Chen, Tao Jiang, Rui Jiang*, Uncover disease genes by maximizing information flow in the phenome-interactome network, Bioinformatics, 27:i167-i176, 2011
  10. Wangshu Zhang, Yong Chen, Fengzhu Sun, Rui Jiang*, DomainRBF: a Bayesian regression approach to the prioritization ofcandidate domains for complex diseases, BMC Systems Biology, 5:55, 2011
  11. Jianxing Feng, Rui Jiang, Tao Jiang, A max-flow basedapproach to the identification of protein complexes using protein interaction and microarray data, IEEE-ACM Transactions on Computational Biology and Bioinformatics, 8(3): 621-634, 2011
  12. Wangshu Zhang, Fengzhu Sun, Rui Jiang*, Integrating multiple protein-protein interaction networks to prioritize disease genes: A Bayesian regression approach, BMC Bioinformatics 12(Supp 1), S11, 2011
  13. Xiaolin Hao, Rui Jiang, Ting Chen, Clustering 16S rRNA for OTU prediction: A method of unsupervised Bayesian clustering, Bioinformatics, 27: 611-618, 2011
  14. Rui Jiang*, Mingxin Gan, Peng He, Constructing a gene semantic similarity network for the prioritization of candidate genes, BMC Systems Biology, 5(Suppl 2):S2, 2011
  15. Jiaxin Wu, Mingxin Gan, Wangshu Zhang, Rui Jiang*, Extraction of sequence conservation features for the prioritization of candidate single amino acid polymorphisms, InternationalJournal of Information Engineering and Electronic Business, 3(2):1-10, 2011
  16. Jiaxin Wu, Mingxin Gan, Rui Jiang*, Prioritization ofcandidate single amino acid polymorphisms using one-class learning machines, International Journal of Computational Biology and Drug Discovery, 4(4): 316-331, 2011
  17. Jiaxin Wu, Mngxin Gan, Wangshu Zhang, Rui Jiang*, Prioritizing candidate single amino acid polymorphisms using physiochemical features, International Journal of Bioscience, Biochemistry and Bioinformatics, 1(2):102-108, 2011
  18. Mingxin Gan, Xue Dou, Daoping Wang, Rui Jiang*, A newmethod for calculating semantic similarity, Computer Engineering and applications, 48(17):148-154, 2011
  19. MAQC Consortium (Rui Jiang at 123 out of 202). The MicroArray Quality Control (MAQC)-II study of common practices forthe development and validation of microarray-based predictive models, Nature Biotechnology, 28:827-838, 2010
  20. Wenhui Wang, Wangshu Zhang, Rui Jiang*, Yihui Luan*, Prioritisation of associations between protein domains and complex diseases using domain–domain interaction networks, IET Systems Biology, 4(3):212-222, 2010
  21. Wangshu Zhang, Yong Chen, Rui Jiang*, Comparative study of network-based prioritizations of human protein domains associated with complex diseases, Frontiers in Electronic Engineering in China, 5(2), 107-118, 2010
  22. Wanwan Tang, Xuebing Wu, Rui Jiang*, Yanda Li*, Epistatic module detection for case-control studies: A Bayesian module with a Gibbs sampling strategy, PLoS Genetics, 5(5): e1000464. doi:10.1371/journal.pgen.1000464, 2009.
    [pdf][pdf @ PLoS Genetics]
  23. Xuebing Wu, Qifang Liu, Rui Jiang*. Align human interactome with phenome to identify causative genes and networks underlying disease families, Bioinformatics, vol.25, no.1, 98-104, 2009.
    [pdf][pdf @ Bioinformatics]
  24. Rui Jiang*, Wanwan Tang, Xuebing Wu, Wenhui Fu. A random forest approach to the detection of epistatic interactions in case-control studies, BMC Bioinformatics, 10(Suppl 1):S65, 2009.
    [pdf][pdf @ BMC bioinformatics]
  25. Rui Jiang, Ting Chen, Fengzhu Sun. Bayesian models and Gibbs sampling strategies for local graph alignment and motif finding in stochastic networks, Communications in Informationand Systems, 9(4):347-370, 2009.
    [pdf][pdf @ Communications in Information and Systems]
  26. Xuebing Wu, Rui Jiang, Michael Q. Zhang, Shao Li. Network-based global inference of human disease genes, MolecularSystems Biology, Vol.4, 189, 2008. [pdf][pdf @ MSB]
  27. Xuebing Wu, Zhirong Sun, Rui Jiang, Logic motif of combinatorial control in transcriptional networks, Nature Precedings, npre.2008.2227.1, 2008
  28. Rui Jiang, Hua Yang, Linqi Zhou, C.-C. Jay Kuo, Fengzhu Sun, and Ting Chen. Sequence-based prioritization of single nucleotide polymorphisms for study of human mutations, American Journal of Human Genetics, Vol.81, No.2, 346-360, 2007. [pdf][pdf @ AJHG]
  29. Rui Jiang, Zhidong Tu, Ting Chen, and Fengzhu Sun. Network Identification in Stochastic Networks. Proc. Natl. Acad. Sci. USA, Vol.103, No.25, 9404~9409, 2006. [pdf][pdf @ PNAS]
  30. Rui Jiang, Hua Yang, Fengzhu Sun, and Ting Chen. Searching for interpretable rules for human mutations: A simulated annealing bump hunting strategy. BMC Bioinformatics, Vol.7, 417, 2006. [pdf][pdf @ BMC]
  31. Rui Jiang, Yupin Luo, Dongcheng Hu, and K. Y. Szeto. A multi-agent cooperating approach to quasi-parallel genetic algorithms. ACTA ELECTRONICA SINICA. Vol.30, No.10, 1490-1495, 2002 (In Chinese)
  32. Rui Jiang, Yupin Luo, and Dongcheng Hu. Adaptive genetic algorithm based on population entropy estimating. Journal of Tsinghua University (Science and Technology). Vol.42, No.3, 358 ~ 361, 2002 (In Chinese)
  33. Rui Jiang, Yupin Luo, and Dongcheng Hu. Distributed parallelgenetic algorithms based on multi- agent cooperating. Journalof Tsinghua University (Science and Technology). Vol.42, No.9, 1209~1213, 2002 (In Chinese)
  34. Rui Jiang, Yupin Luo, Dongcheng Hu, and K. Y. Szeto. Coordinating exploration and exploitation to construct genetic algorithms. Tsinghua Science and Technology. Vol.7, No.5, 608~618, 2002
  35. Rui Jiang, Yupin Luo, Dongcheng Hu, and K. Y. Szeto. A genetic algorithm by coordinating exploration and exploitation: Convergence properties and performance analyses. Chinese Journal of Computers. Vol.24, No.12, 1233-1241, 2001
  36. K. Y. Szeto, and Rui Jiang. A Quasi-Parallel realization of the investment frontier in computer resource allocation using simple genetic algorithm on a single computer. Lecture Notes inComputer Science, Vol.2367, 116~118, 2002. [pdf][pdf @ SpringerLink]
  37. Dongcheng Hu, Rui Jiang, Yupin Luo. An adaptive classifier system tree for extending genetics-based machine learning in a dynamic environment. Artificial life and robotics. Vol.4, No.1, 7-11, 2000.[pdf][pdf @ the Artificial Life andRobotics web site]

Conference Publications

  1. Minghua Deng, Rui Jiang, Fengzhu Sun, Xuegong Zhang (Eds.), Research in Computational Molecular Biology (Proceedings of the 17th Annual International Conference, RECOMB 2013, Beijing, China, April 7-10, 2013), Series Lecture Notes in Computer Science, Vol. 7821, 2013
  2. Yue Huang, Mingxin Gan, Rui Jiang*, Ontology-based genes similarity calculation with TF-IDF, Lecture Notes in Computer Science, 7473:600-607, 2012
  3. Mingxin Gan, Xue Dou, Rui Jiang*, Improving recommendation performance through ontology-based semantic similarity, Lecture Notes in Computer Science, 7473:203-210, 2012
  4. Peng He, Rui Jiang*, Integrating multiple gene semantic similarity profiles to infer disease gene, in Proceedings of the 31st Chinese Control Conference, 7420-7425, 2012
  5. Rui Jiang*, Jiaxin Wu, Integrating sequence conservation features and a domain-domain interaction network to detect disease-associated nsSNPs, in Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine workshops, 262-267, 2011
  6. Mingxin Gan, Xue Dou, Daoping Wang, Rui Jiang, DOPCA:A new method for calculating ontology-based semantic similarity,in Proceedings of the 10th IEEE/ACIS International Conferenceon Computer and Information Science, 334-339, 2011
  7. Jiaxin Wu, Mingxin Gan, Rui Jiang, A genetic algorithm for optimizing subnetwork markers for the study of breast cancer metastasis, in Proceedings of the 2011 Seventh International Conference on Natural Computation (ICNC 2011), 1578-1582,2011
  8. Jiaxin Wu, Wangshu Zhang, Rui Jiang, Comparative Study of Ensemble Learning Approaches in the Identification of Disease Mutations, in Proceedings of the 3rd International Conference on Biomedical Engineering and Informatics (BMEI 2010), Yantai, Shandong, China, 2306-2310, 2010
  9. Rui Jiang, Feng Zeng, Wangshu Zhang, Xuebing Wu, and Zhihong Yu. Accelerating genome-wide association studies using CUDA compatible graphics cards, Proceedings of the 2009 joint conference on bioinformatics, systems biology and intelligent computing (IJCBS2009), 70-76, Shanghai, August 3-5, 2009
  10. Wangshu Zhang, Feng Zeng, Xuebing Wu, Xuegong Zhang, and Rui Jiang. A comparative study of ensemble learning approaches in the classification of breast cancer metastasis, Proceedings of the 2009 joint conference on bioinformatics, systems biology and intelligent computing (IJCBS2009), 242-245, Shanghai, August 3-5, 2009
  11. Xuebing Wu, Qifang Liu, Rui Jiang, Identification of disease genes via network alignment of human interactome and phenome, Proceedings of the Seventh Asia Pacific Bioinformatics Conference (APBC 2009), Beijing, China, January 13-16, 2009
  12. Rui Jiang, Wanwan Tang, Xuebing Wu, Wenhui Fu, A random forest approach to the detection of epistatic interactions incase-control studies, Proceedings of the Seventh Asia Pacific Bioinformatics Conference (APBC 2009), Beijing, China, January 13-16, 2009
  13. Feng Zang, Xuebing Wu, Xuegong Zhang, Rui Jiang, A functional canonical correlation analysis approach to re-verse engineering of in silico gene regulatory networks, Proceedings of the Seventh Asia Pacific Bioinformatics Conference (APBC 2009), Beijing, China, January 13-16, 2009
  14. Wenhui Wang, Wangshu Zhang, Rui Jiang, Yihui Luan, Anapproach to the discovery of associations of protein domains andcomplex diseases, Proceedings of the Seventh Asia Pacific Bioinformatics Conference (APBC 2009), Beijing, China, January 13-16, 2009
  15. Xuebing Wu, Feng Zeng, Rui Jiang, Integrative inference of gene networks from expression data, Proceedings of the 2008 Joint RECOMB Satellite Conference on Regulatory Genomics-Systems biology-DREAM3, Boston, Massachusetts, USA, Oct 29-Nov3, 2008
  16. Jianxing Feng, Rui Jiang, Tao Jiang, A max-flow basedapproach to the identification of protein complexes (extended abstract), Proceedings of the 7th Annual International Conference on Computational Systems Bioinformatics (CSB2008), Stanford, California, USA, August 26-29, 2008
  17. Rui Jiang and Xuegong Zhang, A comparative study of statistical learning methods in the prioritization of nonsynonymous single nucleotide polymorphisms, Proceedings of the Sixth Asia Pacific Bioinformatics Conference (APBC 2008), Kyoto, Japan, January 14-17, 2008
  18. Rui Jiang, and K. Y. Szeto. Extraction of investment strategies based on moving averages: A genetic algorithm approach. Proceedings of the International Conference on Computational Intelligence for Financial Engineering (CIFEr'03), Hong Kong, 2003
  19. Rui Jiang, and K. Y. Szeto. Discovering investment strategies in portfolio management: A genetic algorithm approach. Proceedings of the 9th International Conference on Neural Information Processing (ICONIP'02), Singapore, Vol.3, 2002
  20. Rui Jiang, K. Y. Szeto, Yupin Luo, and Dongcheng Hu. A genetic algorithm architecture by coordinating exploration and exploitation. Proceedings of the Genetic and Evolutionary Computation Conference (GECCO-2001), San Francisco, 383~390, 2001
  21. Dongcheng Hu, Rui Jiang, Yupin Luo, and K. Y. Szeto. An approach to cooperative genetic algorithms. Proceedings of the Sixth International Symposium on Artificial Life and Robotics (AROB 6'01), Tokyo, Japan, Vol.2, 329~332, 2001
  22. Rui Jiang, K. Y. Szeto, Yupin Luo, and Dongcheng Hu. A path-splitting algorithm for large traveling salesman problems with distributed simulated annealing implementation. Proceedings ofthe Third Asian Control Conference. Shanghai, China. CDROM, 2000
  23. Dongcheng Hu, Rui Jiang, Yupin Luo. Effects of population topology in distributed parallel genetic algorithms. Proceedings of the Fifth International Symposium on Artificial Life and Robotics (AROB 5'00), Oita, Japan. Vol.1, 108~111, 2000

Publications in 2013

  1. Feng Zeng, Rui Jiang*, Ting Chen*, PyroHMMsnp: a SNP caller for Ion Torrent and 454 sequencing data, Nucleic Acids Research, accepted, 2013
  2. Mingxin Gan, Rui Jiang*, Improving accuracy and diversity of personalized recommendation through power law adjustments of user similarities, Decision Support Systems, In press, 2013
  3. Mingxin Gan, Rui Jiang*, Constructing a user similarity network to remove adverse influence of popular objects for personalized recommendation, Expert Systems with Applications, 40:4044-4053, 2013
  4. Xin-Ming Zhao, Weidong Tian, Rui Jiang, Jun Wan, Computational Systems Biology, The Scientific World Journal, 2013:350358, 2013
  5. Mingxin Gan, Xue Dou, Rui Jiang*, From ontology to semantic similarity: calculation of ontology-based semantic similarity, The Scientific World Journal, 2013:793091, 2013
  6. Jiaxin Wu, Rui Jiang*, Prediction of deleterious nonsynonymous single-nucleotide polymorphism for human diseases, The Scientific World Journal, 2013:675851, 2013
  7. Minghua Deng, Rui Jiang, Fengzhu Sun, Xuegong Zhang (Eds.), Research in Computational Molecular Biology (Proceedings of the 17th Annual International Conference, RECOMB 2013, Beijing, China, April 7-10, 2013), Series Lecture Notes in Computer Science, Vol. 7821, 2013

Publications in 2012

  1. Bai Jiang, Xujun, Liang, Yang Chen, Tao Ma, Liyang Liu, Junfeng Li, Rui Jiang, Ting Chen, Xuegong Zhang*, Shao Li*, Integrating next-generation sequencing and traditional tongue diagnosis to determine tongue coating microbiome, Scientific Reports, 2:936, 2012
  2. Yong Chen, Wangshu Zhang, Mingxin Gan, Rui Jiang*, Constructing phenome-interactome networks for the prioritization of candidate genes, Statistics and Its Interface, 5:137-148, 2012
  3. Yue Huang, Mingxin Gan, Rui Jiang*, Ontology-based genes similarity calculation with TF-IDF, Lecture Notes in Computer Science, 7473:600-607, 2012
  4. Mingxin Gan, Xue Dou, Rui Jiang*, Improving recommendation performance through ontology-based semantic similarity, Lecture Notes in Computer Science, 7473:203-210, 2012
  5. Peng He, Rui Jiang*, Integrating multiple gene semantic similarity profiles to infer disease gene, in Proceedings of the 31st Chinese Control Conference, 7420-7425, 2012

Publications in 2011

  1. Yong Chen, Tao Jiang, Rui Jiang*, Uncover disease genes by maximizing information flow in the phenome-interactome network, Bioinformatics, 27:i167-i176, 2011
  2. Wangshu Zhang, Yong Chen, Fengzhu Sun, Rui Jiang*, DomainRBF: a Bayesian regression approach to the prioritization ofcandidate domains for complex diseases, BMC Systems Biology, 5:55, 2011
  3. Jianxing Feng, Rui Jiang, Tao Jiang, A max-flow basedapproach to the identification of protein complexes using protein interaction and microarray data, IEEE-ACM Transactions on Computational Biology and Bioinformatics, 8(3): 621-634, 2011
  4. Wangshu Zhang, Fengzhu Sun, Rui Jiang*, Integrating multiple protein-protein interaction networks to prioritize disease genes: A Bayesian regression approach, BMC Bioinformatics 12(Supp 1), S11, 2011
  5. Xiaolin Hao, Rui Jiang, Ting Chen, Clustering 16S rRNA for OTU prediction: A method of unsupervised Bayesian clustering, Bioinformatics, 27: 611-618, 2011
  6. Rui Jiang*, Mingxin Gan, Peng He, Constructing a gene semantic similarity network for the prioritization of candidate genes, BMC Systems Biology, 5(Suppl 2):S2, 2011
  7. Jiaxin Wu, Mingxin Gan, Wangshu Zhang, Rui Jiang*, Extraction of sequence conservation features for the prioritization of candidate single amino acid polymorphisms, InternationalJournal of Information Engineering and Electronic Business, 3(2):1-10, 2011
  8. Jiaxin Wu, Mingxin Gan, Rui Jiang*, Prioritization ofcandidate single amino acid polymorphisms using one-class learning machines, International Journal of Computational Biology and Drug Discovery, 4(4): 316-331, 2011
  9. Jiaxin Wu, Mngxin Gan, Wangshu Zhang, Rui Jiang*, Prioritizing candidate single amino acid polymorphisms using physiochemical features, International Journal of Bioscience, Biochemistry and Bioinformatics, 1(2):102-108, 2011
  10. Rui Jiang*, Jiaxin Wu, Integrating sequence conservation features and a domain-domain interaction network to detect disease-associated nsSNPs, in Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine workshops, 262-267, 2011
  11. Mingxin Gan, Xue Dou, Daoping Wang, Rui Jiang, DOPCA:A new method for calculating ontology-based semantic similarity,in Proceedings of the 10th IEEE/ACIS International Conferenceon Computer and Information Science, 334-339, 2011
  12. Jiaxin Wu, Mingxin Gan, Rui Jiang, A genetic algorithm for optimizing subnetwork markers for the study of breast cancer metastasis, in Proceedings of the 2011 Seventh International Conference on Natural Computation (ICNC 2011), 1578-1582,2011

Publications in 2010

  1. MAQC Consortium (Rui Jiang at 123 out of 202). The MicroArray Quality Control (MAQC)-II study of common practices forthe development and validation of microarray-based predictive models, Nature Biotechnology, 28:827-838, 2010
  2. Wenhui Wang, Wangshu Zhang, Rui Jiang, Yihui Luan, Prioritisation of associations between protein domains and complexdiseases using domain–domain interaction networks, IET Systems Biology, 4(3):212-222, 2010
  3. Wangshu Zhang, Yong Chen, Rui Jiang, Comparative study of network-based prioritizations of human protein domains associated with complex diseases, Frontiers in Electronic Engineering in China, 5(2), 107-118, 2010
  4. Jiaxin Wu, Wangshu Zhang, Rui Jiang, Comparative Study of Ensemble Learning Approaches in the Identification of Disease Mutations, in Proceedings of the 3rd International Conference on Biomedical Engineering and Informatics (BMEI 2010), Yantai, Shandong, China, 2306-2310, 2010

Publications in 2009

  1. Wanwan Tang, Xuebing Wu, Rui Jiang, Yanda Li, Epistatic module detection for case-control studies: A Bayesian module with a Gibbs sampling strategy, PLoS Genetics, 5(5): e1000464. doi:10.1371/journal.pgen.1000464, 2009.
    [pdf][pdf @ PLoS Genetics]
  2. Xuebing Wu, Qifang Liu, Rui Jiang. Align human interactome with phenome to identify causative genes and networks underlying disease families, Bioinformatics, vol.25, no.1, 98-104, 2009.
    [pdf][pdf @ Bioinformatics]
  3. Rui Jiang, Wanwan Tang, Xuebing Wu, Wenhui Fu. A random forest approach to the detection of epistatic interactions incase-control studies, BMC Bioinformatics, 10(Suppl 1):S65, 2009.
    [pdf][pdf @ BMC bioinformatics]
  4. Rui Jiang, Ting Chen, Fengzhu Sun. Bayesian models and Gibbs sampling strategies for local graph alignment and motif finding in stochastic networks, Communications in Informationand Systems, 9(4):347-370, 2009.
    [pdf][pdf @ Communications in Information and Systems]
  5. Rui Jiang, Feng Zeng, Wangshu Zhang, Xuebing Wu, and Zhihong Yu. Accelerating genome-wide association studies using CUDA compatible graphics cards, Proceedings of the 2009 joint conference on bioinformatics, systems biology and intelligent computing (IJCBS2009), 70-76, Shanghai, August 3-5, 2009.
    [pdf]
  6. Wangshu Zhang, Feng Zeng, Xuebing Wu, Xuegong Zhang, and Rui Jiang. A comparative study of ensemble learning approaches in the classification of breast cancer metastasis, Proceedings of the 2009 joint conference on bioinformatics, systems biology and intelligent computing (IJCBS2009), 242-245, Shanghai, August 3-5, 2009.
    [pdf]
  7. Xuebing Wu, Qifang Liu, Rui Jiang, Identification of disease genes via network alignment of human interactome and phenome, Proceedings of the Seventh Asia Pacific Bioinformatics Conference (APBC 2009), Beijing, China, January 13-16, 2009
  8. Feng Zang, Xuebing Wu, Xuegong Zhang, Rui Jiang, A functional canonical correlation analysis approach to re-verse engineering of in silico gene regulatory networks, Proceedings of the Seventh Asia Pacific Bioinformatics Conference (APBC 2009), Beijing, China, January 13-16, 2009
  9. Wenhui Wang, Wangshu Zhang, Rui Jiang, Yihui Luan, Anapproach to the discovery of associations of protein domains andcomplex diseases, Proceedings of the Seventh Asia Pacific Bioinformatics Conference (APBC 2009), Beijing, China, January 13-16, 2009
  10. Rui Jiang, Wanwan Tang, Xuebing Wu, Wenhui Fu, A random forest approach to the detection of epistatic interactions incase-control studies, Proceedings of the Seventh Asia Pacific Bioinformatics Conference (APBC 2009), Beijing, China, January 13-16, 2009
  11. Feng Zang, Xuebing Wu, Xuegong Zhang, Rui Jiang, A functional canonical correlation analysis approach to re-verse engineering of in silico gene regulatory networks, Proceedings of the Seventh Asia Pacific Bioinformatics Conference (APBC 2009), Beijing, China, January 13-16,2009

Publications in 2008

  1. Xuebing Wu, Rui Jiang, Michael Q. Zhang, Shao Li. Network-based global inference of human disease genes, MolecularSystems Biology, Vol.4, 189, 2008.
    SCI impact factor: 9.95. [pdf][pdf @ MSB]
  2. Xuebing Wu, Zhirong Sun, Rui Jiang, Logic motif of combinatorial control in transcriptional networks, Nature Precedings, npre.2008.2227.1, 2008
  3. Xuebing Wu, Feng Zeng, Rui Jiang, Integrative inference of gene networks from expression data, Proceedings of the 2008 Joint RECOMB Satellite Conference on Regulatory Genomics-Systems biology-DREAM3, Boston, Massachusetts, USA, Oct 29-Nov3, 2008
  4. Jianxing Feng, Rui Jiang, Tao Jiang, A max-flow basedapproach to the identification of protein complexes (extended abstract), Proceedings of the 7th Annual International Conference on Computational Systems Bioinformatics (CSB2008), Stanford, California, USA, August 26-29, 2008
  5. Rui Jiang and Xuegong Zhang, A comparative study of statistical learning methods in the prioritization of nonsynonymous single nucleotide polymorphisms, Proceedings of the Sixth Asia Pacific Bioinformatics Conference (APBC 2008), Kyoto, Japan, January 14-17, 2008

Publications in 2007

  1. Rui Jiang, Hua Yang, Linqi Zhou, C.-C. Jay Kuo, Fengzhu Sun, and Ting Chen. Sequence-based prioritization of single nucleotide polymorphisms for study of human mutations, American Journal of Human Genetics, Vol.81, No.2, 346-360, 2007.
    SCI impact factor: 12.7. [pdf][pdf @ AJHG]

Publications in 2006

  1. Rui Jiang, Zhidong Tu, Ting Chen, and Fengzhu Sun. Network Identification in Stochastic Networks. Proc. Natl. Acad. Sci. USA, Vol.103, No.25, 9404~9409, 2006.
    SCI impact factor: 10.3. [pdf][pdf@ PNAS]
  2. Rui Jiang, Hua Yang, Fengzhu Sun, and Ting Chen. Searching for interpretable rules for human mutations: A simulated annealing bump hunting strategy. BMC Bioinformatics, Vol.7, 417, 2006.
    SCI impact factor: 4.96. [pdf][pdf @ BMC]

Publications in 2005 and earlier

  1. Rui Jiang, and K. Y. Szeto. Extraction of investment strategies based on moving averages: A genetic algorithm approach. Proceedings of the International Conference on Computational Intelligence for Financial Engineering (CIFEr'03), Hong Kong, 2003.
    [pdf][pdf @ IEEE Xplore]
  2. K. Y. Szeto, and Rui Jiang. A Quasi-Parallel realization of the investment frontier in computer resource allocation using simple genetic algorithm on a single computer. Lecture Notes inComputer Science, Vol.2367, 116~118, 2002. SCI indexed, has been cited 4 times. [pdf][pdf @ SpringerLink]
  3. Rui Jiang, Yupin Luo, Dongcheng Hu, and K. Y. Szeto. A multi-agent cooperating approach to quasi-parallel genetic algorithms. ACTA ELECTRONICA SINICA. Vol.30, No.10, 1490-1495, 2002. EI indexed, has been cited 10 times
  4. Rui Jiang, Yupin Luo, and Dongcheng Hu. Adaptive genetic algorithm based on population entropy estimating. Journal of Tsinghua University (Science and Technology). Vol.42, No.3, 358 ~ 361, 2002. EI indexed, has been cited 8 times
  5. Rui Jiang, Yupin Luo, and Dongcheng Hu. Distributed parallelgenetic algorithms based on multi- agent cooperating. Journalof Tsinghua University (Science and Technology). Vol.42, No.9, 1209~1213, 2002. EI indexed, has been cited 1 times
  6. Rui Jiang, Yupin Luo, Dongcheng Hu, and K. Y. Szeto. Coordinating exploration and exploitation to construct genetic algorithms. Tsinghua Science and Technology. Vol.7, No.5, 608~618, 2002. EI indexed
  7. Rui Jiang, and K. Y. Szeto. Discovering investment strategies in portfolio management: A genetic algorithm approach. Proceedings of the 9th International Conference on Neural Information Processing (ICONIP'02), Singapore, Vol.3, 2002.
    [pdf][pdf @ IEEE Xplore]
  8. Rui Jiang, K. Y. Szeto, Yupin Luo, and Dongcheng Hu. A genetic algorithm architecture by coordinating exploration and exploitation. Proceedings of the Genetic and Evolutionary Computation Conference (GECCO-2001), San Francisco, 383~390, 2001
  9. Rui Jiang, Yupin Luo, Dongcheng Hu, and K. Y. Szeto. A genetic algorithm by coordinating exploration and exploitation: Convergence properties and performance analyses. Chinese Journal of Computers. Vol.24, No.12, 1233-1241, 2001. EI indexed, has been cited 15 times
  10. Dongcheng Hu, Rui Jiang, Yupin Luo, and K. Y. Szeto. An approach to cooperative genetic algorithms. Proceedings of the Sixth International Symposium on Artificial Life and Robotics (AROB 6'01), Tokyo, Japan, Vol.2, 329~332, 2001
  11. Rui Jiang, K. Y. Szeto, Yupin Luo, and Dongcheng Hu. A path-splitting algorithm for large traveling salesman problems with distributed simulated annealing implementation. Proceedings ofthe Third Asian Control Conference. Shanghai, China. CDROM, 2000
  12. Dongcheng Hu, Rui Jiang, Yupin Luo. Effects of population topology in distributed parallel genetic algorithms. Proceedings of the Fifth International Symposium on Artificial Life and Robotics (AROB 5'00), Oita, Japan. Vol.1, 108~111, 2000
  13. Dongcheng Hu, Rui Jiang, Yupin Luo. An adaptive classifier system tree for extending genetics-based machine learning in a dynamic environment. Artificial life and robotics. Vol.4, No.1, 7-11, 2000.[pdf][pdf @ the Artificial Life andRobotics web site]