Overview

Task
None
Tissue
None
Dataset
None
Dataset
Zhang2021 19
Domcke2020 14
Terekhanova2023 4
Mimitou2021 3
Pierce2021 3
Garcia-Alonso2022 2
Satpathy2019 2
Granja2019 2
Ameen2022 2
Yoshimura2023 1
Wang2023 1
Lee2023 1
Zhang2022 1
Muto2021 1
Corces2020 1
Mannens2024 1
Ziffra2021 1
Zhu2023 1
Wang2022 1
Trevino2021 1
Kanemaru2023 1
Morabito2021 1
Ma2022 1
Liscovitch-Brauer2021 1
Jin2025 1
Herring2022 1
Duong2022 1
Li2023a 1
Li2023b 1
Buenrostro2018 1
Chiou2021 1
Wang2020 1
Hocker2021 1
Lareau2019 1
Liang2023 1
Task
Self-supervised pretraining 77
Batch effect correction 66
Unsupervised feature extraction and supervised cell type annotation 46
Cell states prediction under unseen genetic perturbation 4
Cell states prediction under out-of-sample stimulated perturbation 4
Tissue or Cell Line
Brain tissue 13
Pulmonary tissue 5
Peripheral blood mononuclear cells 5
Cardiac tissue 4
Bone marrow tissue 4
Pancreatic tissue 3
Ovarian tissue 3
Retinal tissue 2
Renal tissue 2
Ocular tissue 2
K562 cells 2
Gastric tissue 2
Intestinal tissue 2
Muscle tissue 2
Hepatic tissue 2
Heart tissue 2
Adrenal gland 2
Splenic tissue 1
Kidney tissue 1
GM12878 cells 1
Clear-cell renal cell carcinoma 1
Glioblastoma 1
MCF7 cells 1
Pituitary tissue 1
Thymic tissue 1
Thyroid tissue 1
Placental tissue 1
Genital tissue 1
Uterine tissue 1
Cutaneous tissue 1
Nervous tissue 1
Mammary tissue 1
Esophageal tissue 1
Colonic tissue 1
Vascular tissue 1
Adipose tissue 1
Testicular tissue 1

Table

ID Sample Dataset Tissue Cell-by-cCRE Matrix Fragment File Cell-by-peak Matrix Used For Tasks Availability Number of Cells Number of Cell Types Number of Batches Organ Sequencing Technology Raw Data Type PMID Corresponding Study

Statistics

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Distribution of the number of cell for each sequence technology

Distribution of the number of cell for each raw datatype

Distribution of the number of cell for each tissue

Distribution of the number of cell for each dataset