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EpiScanpy
Signac
SnapATAC
ArchR
scEpiEnsemble
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Run analysis with ArchR
Fragment file
*
:
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Example
Specify parameters in preprocessing step
Reference genome
*
:
hg19
hg38
mm9
mm10
Minimum TSS enrichment
*
:
Minimum fragments in peaks
*
:
Specify parameters in downstream analysis step
Clustering algorithm
*
:
Seurat
Scran
Visualization method
*
:
umap
tsne
Marker genes
:
Email address:
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Retrieve previously submitted task
TaskID:
Example
Retrieve
Individual steps of the analysis on example dataset