scEpiTools

Run analysis with EpiScanpy

H5ad file* :

Specify input file type* :

Specify parameters in preprocessing step

Reference genome* :

Binarization* :

Minimum peaks* :

Minimum cells* :

Minimum features* :

Minimum score value* :

Number of selected features* :

Specify parameters in dimension reduction step

Number of PCs* :

Number of neighbors* :

Method for connectivity* :

Distance metric* :

Perplexity* :

Minimum distance* :

Normalization* :

Specify parameters in clustering and visualization step

Clustering algorithm* :

Visualization method* :

Number of clusters* :

Cluster resolution* :

Random seed* :

Email address: