scEpiTools

Run analysis with Signac

Matrix file*:

Fragment file*:

Metadata file*:

Single-cell RNA-seq file:

Specify parameters in preprocessing step

Reference genome* :

Minimum peaks* :

Minimum cells* :

Minimum fragments in peaks* :

Maximum fragments in peaks* :

Minimum fraction in peaks* :

Maximum ratio in blacklist* :

Maximum nucleosome signal* :

Minimum TSS enrichment* :

Specify parameters in downstream analysis step

Select dimensions* :

Clustering algorithm* :

First cluster number* :

Second cluster number* :

Visualization method* :

Marker genes :

Email address: