| Main categories | Number of tools (as of Jun 2025) | TSV |
|---|---|---|
dimensionality reduction | 159 | | [MD5] |
clustering | 55 | | [MD5] |
review | 91 | | [MD5] |
regulatory network inference | 90 | | [MD5] |
multi-omics integration | 180 | | [MD5] |
single-omics integration | 38 | | [MD5] |
cross-omics translation | 26 | | [MD5] |
imputation | 57 | | [MD5] |
cell type annotation | 51 | | [MD5] |
preprocessing | 43 | | [MD5] |
differential feature analysis | 49 | | [MD5] |
sequencing technology & application | 358 | | [MD5] |
simulation | 11 | | [MD5] |
other | 174 | | [MD5] |
| Tool | Docker image | Docker file |
|---|---|---|
EpiScanpy | docker pull scepitools/episcanpy:latest | | [MD5] |
Signac | docker pull timoast/signac:latest | | [MD5] |
Seurat-V4 | docker pull scepitools/seurat-v4:latest | | [MD5] |
SCALE | docker pull scepitools/scale:latest | | [MD5] |
SnapTools | docker pull scepitools/snaptools:latest | | [MD5] |
ArchR | docker pull scepitools/archr:latest | | [MD5] |